PlantTFDB
Plant Transcription Factor Database
v4.0
Previous version: v3.0
Transcription Factor Information
Basic Information | Signature Domain | Sequence | 
Basic Information? help Back to Top
TF ID Cucsa.359290.1
Common NameCsa_7G447040, LOC101218066
Organism
Taxonomic ID
Taxonomic Lineage
cellular organisms; Eukaryota; Viridiplantae; Streptophyta; Streptophytina; Embryophyta; Tracheophyta; Euphyllophyta; Spermatophyta; Magnoliophyta; Mesangiospermae; eudicotyledons; Gunneridae; Pentapetalae; rosids; fabids; Cucurbitales; Cucurbitaceae; Benincaseae; Cucumis
Family bHLH
Protein Properties Length: 298aa    MW: 33441.3 Da    PI: 7.3197
Description bHLH family protein
Gene Model
Gene Model ID Type Source Coding Sequence
Cucsa.359290.1genomeJGIView CDS
Signature Domain? help Back to Top
Signature Domain
No. Domain Score E-value Start End HMM Start HMM End
1HLH12.70.000241732111255
                     HHHHHHHHHHHHHCTSCCC...TTS-STCHHHHHHHHHHHHHHH CS
             HLH  12 RRdriNsafeeLrellPkaskapskKlsKaeiLekAveYIksLq 55 
                     R +++ +++  L +++ +      +K + a++L +A+ YI+ Lq
  Cucsa.359290.1 173 RKEKLVDRITALHQIVSPF-----GKTDTASVLSEAIGYIRFLQ 211
                     6667778899999999887.....8******************9 PP

Protein Features ? help Back to Top
3D Structure
Database Entry ID E-value Start End InterPro ID Description
PROSITE profilePS5088810.868161210IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
CDDcd000833.47E-5171215No hitNo description
SuperFamilySSF474592.49E-9171223IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene3DG3DSA:4.10.280.102.1E-7175218IPR011598Myc-type, basic helix-loop-helix (bHLH) domain
Gene Ontology ? help Back to Top
GO Term GO Category GO Description
GO:0046983Molecular Functionprotein dimerization activity
Sequence ? help Back to Top
Protein Sequence    Length: 298 aa     Download sequence    Send to blast
MMAGNPNWWA MFPPSSFSSF ADHQPQSWSQ LLLGDEDRVL NQTQMSHYQP KKLENWEDQI  60
LNNNITSSSQ FEASTFVDNI IVKQQQLHSN NNILHPNTII SSHHTNKFLD FSSNTNNNNQ  120
DHNTNHLALR PAAPDPDHLS ESSKNQSIGS TGGACKKARV HPPSSSQPPL KVRKEKLVDR  180
ITALHQIVSP FGKTDTASVL SEAIGYIRFL QGQIEALSYP YLQSAPKDLR NSQPMGGEEM  240
MKNEDEKRLM KDLRSKGLCL VPLSCTHLVG ADHTNHNNIN NNNHHHNNIA LPYWSPF*
Regulation -- PlantRegMap ? help Back to Top
Source Upstream Regulator Target Gene
PlantRegMapRetrieve-
Annotation -- Nucleotide ? help Back to Top
Source Hit ID E-value Description
GenBankLN6832631e-115LN683263.1 Cucumis melo genomic scaffold, unanchored_scaffold01459.
Annotation -- Protein ? help Back to Top
Source Hit ID E-value Description
RefseqXP_004141839.10.0PREDICTED: transcription factor bHLH68
SwissprotQ8S3D13e-42BH068_ARATH; Transcription factor bHLH68
TrEMBLA0A0A0K9570.0A0A0A0K957_CUCSA; Uncharacterized protein
STRINGPOPTR_0001s18660.19e-67(Populus trichocarpa)
Orthologous Group ? help Back to Top
LineageOrthologous Group IDTaxa NumberGene Number
FabidsOGEF12233379
Best hit in Arabidopsis thaliana ? help Back to Top
Hit ID E-value Description
AT4G29100.12e-38bHLH family protein
Publications ? help Back to Top
  1. Ren Y, et al.
    An integrated genetic and cytogenetic map of the cucumber genome.
    PLoS ONE, 2009. 4(6): p. e5795
    [PMID:19495411]
  2. Guo S, et al.
    Transcriptome sequencing and comparative analysis of cucumber flowers with different sex types.
    BMC Genomics, 2010. 11: p. 384
    [PMID:20565788]
  3. Li Z, et al.
    RNA-Seq improves annotation of protein-coding genes in the cucumber genome.
    BMC Genomics, 2011. 12: p. 540
    [PMID:22047402]